This short bash script analyses the H-bond occupancy from Gromacs MD trajectory.
Run the bash file in the folder having trajectory using command :
user$ bash hbond_occupancy.sh
Occupancy Perl Script: http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/scripts.html
As the entropic term is missing in g_mmpbsa tool. We have to calculate the entropy of protein-ligand system for estimating binding free energy.
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