Program mdrun_mpi, VERSION 4.6.2
Source code file: /home/krishna/Software/gromacs-4.6.2/src/mdlib/pme.c, line: 828
Fatal error:
1 particles communicated to PME node 3 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
This usually means that your system is not well equilibrated.
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
"It's just the way this stuff is done" (Built to Spill)
Error on node 3, will try to stop all the nodes
Halting parallel program mdrun_mpi on CPU 3 out of 4
gcq#326: "It's just the way this stuff is done" (Built to Spill)
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD
with errorcode -1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[compute-0-9.local][[37879,1],1][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.1.245 failed: Connection refused (111)
-------------------------------------------------------
Program mdrun_mpi, VERSION 4.6.2
Source code file: /home/krishna/Software/gromacs-4.6.2/src/mdlib/pme.c, line: 828
Fatal error:
2 particles communicated to PME node 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
This usually means that your system is not well equilibrated.
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
"It's just the way this stuff is done" (Built to Spill)
Error on node 0, will try to stop all the nodes
Halting parallel program mdrun_mpi on CPU 0 out of 4
gcq#326: "It's just the way this stuff is done" (Built to Spill)
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