Can you suggest me a program to identify structure similarity ?

06 June 2015 0 3K Report

I need a program which could give me structure similarity once I insert a specific compound (not proteins). For example which are the compounds resembling more the structure of β-Cyclodextrin?

Badges
Science topic

Similar topics
Computer Science
Program

More Giulio Preta's questions See All

Is there a way to predict the upcoming impact factor of a journal?

I was quite disappointed to discover that the impact factor of Cell Communication and Signaling where I recently published a review, dropped from 4.6 to 3.38. I never seen such a huge decrease in...

05 June 2015 5,718 0 View

What determines rafts association of lipids and proteins?

Lipid rafts are membrane domains enriched in cholesterol and sphingolipids and their importance is constantly increasing: they are involved in membrane organization and internal signaling since...

04 May 2015 8,171 4 View

Why is the double-blind revision process not taken in consideration by any journal?

The double-blind revision process is a mechanism that in my opinion should be taken into consideration by scientific journals since many times papers are accepted in high impact factor journals...

11 December 2013 3,808 2 View

How to solve g_mmpbsa error?

Program: g_mmpbsa, version 2024.1 Source file: extrn_apbs.cxx (line 152) Fatal error: Failed to execute command: $APBS pybYcUWA.in --output-file=pybYcUW.out

07 August 2024 6,066 0 View

Do I need specific antibodies to stain for a fusion protein?

I am staining some brain sections stored in cryoprotectant that express a Histone H2B- GFP fusion protein that were generated ~10 years ago. I know I need to enhance signal with an anti-GFP...

07 August 2024 5,338 2 View

What is the relationship between protein structure and N or C terminal tagging choosing?

I want to do 2,3-butanediol dehydrogenase(BDH) enzyme purification to confirm its activity for 2,3-butanediol. Before that, I need to confirm which N or C terminal tagging is better for enzyme...

28 July 2024 366 3 View

Are students in the MBA program in Fisheries Enterprises Management eligible to work in the aquaculture industry abroad?

Are students in the MBA program in Fisheries Enterprises Management eligible to work in the aquaculture industry abroad? Could you explain the foreign countries interested in recruiting...

28 July 2024 8,378 2 View

How can we calculate the percentage of configuration interaction (CI) in the UV output data of the Gaussian program?

How can we calculate the percentage of configuration interaction (CI) in the UV output data of the Gaussian program? for example: Excited State 17: Singlet-A 5.1359 eV 241.41 nm...

28 July 2024 9,165 2 View

Someone have the key or the installer of the program Mx pro 3000 (PCR real time)?

I need to install this program

25 July 2024 4,756 0 View

Has the Affordable Connectivity Program Helped You/Your Community? And Would Bulk Tablets on a Similar Program Help Your Business?

Do You Believe VP Harris Would Show Empathy to Tech Companies in Her Administration as POTUS? I ask in light of the fact that, the ACP was not re-funded this round. So many and businesses need...

24 July 2024 4,732 3 View

How to quantify the fluorescence intensity of only the merge area of an image using ImageJ software?

Dear All: I have to quantify the fluorescence intensity of cells that are fluorescent to two different markers, so i'm interested in finding out if this is possible. Previously I have...

22 July 2024 8,770 1 View

How to estimate a protien's size using Chimera or PyMol? how correct this estimated can be?

I need to know the approximate size of my target protein for Negative-stain EM. I have an alpha-fold predicted structure of the protein. I do not see any turtorial on internet for estimating the...

21 July 2024 5,732 3 View

How to extract binding energy from pv.maegz file without using Schrodinger?

I have conducted virtual screening using Schrödinger on a database of 17,000 molecules. Unfortunately, I cannot use the system with the Schrödinger license at the moment. I am trying to find a way...

18 July 2024 2,881 4 View