.
You can try t-rex http://trex.biohpc.org/ it is desgined for analysis of TRFLP but it could be used for any type of AMMI analysis if the data was formatted correctly.
Note: Principal Component Analysis (PCA), not 'Principle Component Analysis'.
Have you tried with R? It is a very interesting, free software for statitistics.
You can dowload it from http://www.r-project.org/
Tanks for suggestion.. i shall try it
You can use the GGE biplot software [http://www.ggebiplot.com/biplot], however is not a free software.
Can anybody help with AMMI analysis in SAS environments and its data arrangements?
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