It is my first time to analyze sequence data of 16s and CO1 for my population genetics studies. I want to know if there is genetic differentiation of samples among locations. I am planning to do haplotype inference, isolation by distance, and AMOVA among others. If you could give me website links, softwares, reference journals, code in R etc is highly appreciated. Thank you.
There are many softwares for analysing genetic diversity of COI, like DnaSP(for diversity analysis), POPART(for drawing networks) etc. I am attaching some papers about POPART which will guide you about network construction.
Maria Angenica Fulo Regilme What organism do you work with? There is a lot of information available on the net about this type of analysis, which are also very interesting. I leave a link to a paper where we perform some analysis of which you comment. https://peerj.com/articles/1855/
If you require additional support let me know
- Badges
- Science topic